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BNF5106 / BIOL5515 Bioinformatics
Syllabus
Tentative schedule (subject to change):
Date
Weekday
Topic
Professor
09/06/2017
Wednesday
Introduction to molecular biology
Drouin
09/11/2017
Monday
Overview of Bioinformatics
Xia
09/13/2017
Wednesday
Preliminary research project assignment and organization issues
Xia
09/18/2017
Monday
FASTA and BLAST algorithms in database searches
Xia
09/20/2017
Wednesday
Sequence alignment by dynammic programming
Xia
09/25/2017
Monday
Next-generation sequencing and applications
Xia
09/27/2017
Wednesday
PWM and Perceptron
Xia
09/25/2017
Monday
UPGMA and Self-organizing maps
Xia
10/04/2017
Wednesday
Machine Learning for Bioinformatics Classifiers
Green
10/09/2017
Monday
Thanksgiving
10/11/2017
Wednesday
Gibbs sampler
Xia
10/16/2017
Monday
Constructing network models from expression data
Perkins
10/18/2017
Wednesday
Research projects update
Xia
10/23/2017
Monday
Reading week
10/25/2017
Wednesday
Reading week
10/30/2017
Monday
More on project updates
Xia
11/01/2017
Wednesday
Gibbs sampler and its applications
Xia
11/06/2017
Monday
Molecular phylogenetics:
Distance-based methods
, (optional)
Substitution models
Xia
11/08/2017
Wednesday
Recent ideas for the detection of adaptation in protein-coding genes
Rodrigue
11/13/2017
Monday
Lightning talks
Xia
11/15/2017
Wednesday
Chromosomal evolution at the gene order level
Sankoff
11/20/2017
Monday
High performance computing for bioinformatics
Palidwor
11/22/2017
Wednesday
Bioinformatics approaches in studying gene regulation
Ioschikhes
11/27/2017
Monday
DNA Aptamers: From Biomolecular Interactions to Diagnostics and Therapeutics
Berezovski
11/29/2017
Wednesday
Course evaluation; Organization of oral presentations.
Xia
12/04/2017
Monday
Student oral presentation
Xia
12/06/2017
Wednesday
Student oral presentation
Xia
BioinfoUPGMA_SOM.pptx
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