LOCUS NC_007373 2341 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 1, complete sequence. ACCESSION NC_007373 VERSION NC_007373.1 GI:73919059 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 2341) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 2341) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2341) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002071. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2341 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="1" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 28..2307 /gene="PB2" /locus_tag="FLUAVH3N2_s1p1" /db_xref="GeneID:3655161" CDS 28..2307 /gene="PB2" /locus_tag="FLUAVH3N2_s1p1" /codon_start=1 /product="polymerase PB2" /protein_id="YP_308849.1" /db_xref="GI:73919060" /db_xref="GeneID:3655161" /translation="MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPS LRMKWMMAMKYPITADKRITEMVPERNEQGQTLWSKMSDAGSDRVMVSPLAVTWWNRN GPVASTVHYPKVYKTYFDKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQ DVIMEVVFPNEVGARILTSESQLTITKEKKEELRDCKISPLMVAYMLERELVRKTRFL PVAGGTSSIYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADP LASLLEMCHSTQIGGTRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTS GSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGRDEQ SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG IEHIDSVMGMVGVLPDMTPSTEMSMRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR GNVLLSPEEVSETQGTERLTITYSSSMMWEINGPESVLVNTYQWIIRNWEAVKIQWSQ NPAMLYNKMEFEPFQSLVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAA PPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDPDES TSGVESAVLRGFLIIGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRD SSILTDSQTATKRIRMAIN" ORIGIN 1 agcaaaagca ggtcaattat attcagtatg gaaagaataa aagaactacg gaacctgatg 61 tcgcagtctc gcactcgcga gatactgaca aaaaccacag tggaccatat ggccataatt 121 aagaagtaca catcggggag acaggaaaag aacccgtcac ttaggatgaa atggatgatg 181 gcaatgaaat acccaatcac tgctgacaaa aggataacag aaatggttcc ggagagaaat 241 gaacaaggac aaactctatg gagtaaaatg agtgatgctg gatcagatcg agtgatggta 301 tcacctttgg ctgtaacatg gtggaataga aatggacccg tggcaagtac ggtccattac 361 ccaaaagtat acaagactta ttttgacaaa gtcgaaaggt taaaacatgg aacctttggc 421 cctgttcatt ttagaaatca agtcaagata cgcagaagag tagacataaa ccctggtcat 481 gcagacctca gtgccaaaga ggcacaagat gtaattatgg aagttgtttt tcccaatgaa 541 gtgggagcca ggatactaac atcagaatcg caattaacaa taactaaaga gaaaaaagaa 601 gaactccgag attgcaaaat ttctcccttg atggttgcat acatgttaga gagagaactt 661 gtccgaaaaa caagatttct cccagttgct ggcggaacaa gcagtatata cattgaagtc 721 ttacatttga ctcaaggaac gtgttgggaa caaatgtaca ctccaggtgg agaagtgagg 781 aatgacgatg ttgaccaaag cctaattatt gcggccagga acatagtaag aagagctgca 841 gtatcagcag atccactagc atctttattg gagatgtgcc acagcacaca aattggcggg 901 acaaggatgg tggacattct tagacagaac ccgactgaag aacaagctgt ggatatatgc 961 aaggctgcaa tgggattgag aatcagctca tccttcagct ttggtgggtt tacatttaaa 1021 agaacaagcg ggtcatcagt caaaaaagag gaagaagtgc ttacaggcaa tctccaaaca 1081 ttgaagataa gagtacatga ggggtatgag gagttcacaa tggtggggaa aagagcaaca 1141 gctatactca gaaaagcaac cagaagattg gttcagctca tagtgagtgg aagagacgaa 1201 cagtcaatag ccgaagcaat aatcgtggcc atggtgtttt cacaagagga ttgcatgata 1261 aaagcagtta gaggtgacct gaatttcgtc aacagagcaa atcaacggtt gaaccccatg 1321 catcagcttt taaggcattt tcagaaagat gcgaaagtgc tttttcaaaa ttggggaatt 1381 gaacacatcg acagtgtgat gggaatggtt ggagtattac cagatatgac tccaagcaca 1441 gagatgtcaa tgagaggaat aagagtcagc aaaatgggtg tggatgaata ctccagtaca 1501 gagagggtgg tggttagcat tgatcggttt ttgagagttc gagaccaacg cgggaatgta 1561 ttattgtctc ctgaggaggt cagtgaaaca cagggaactg aaagattgac aataacatat 1621 tcatcgtcga tgatgtggga gattaacggt cctgagtcgg ttttggtcaa tacctatcaa 1681 tggatcatca gaaattggga agctgtcaaa attcaatggt ctcagaatcc tgcaatgttg 1741 tacaacaaaa tggaatttga accatttcaa tctttagtcc ccaaggccat tagaagccaa 1801 tacagtgggt ttgtcagaac tctattccaa caaatgagag acgtacttgg gacatttgac 1861 accacccaga taataaagct tctccctttt gcagccgctc caccaaagca aagcagaatg 1921 cagttctctt cactgactgt aaatgtgagg ggatcaggga tgagaatact tgtaaggggc 1981 aattctcctg tattcaacta caacaagacc actaaaagac taacaattct cggaaaagat 2041 gccggcactt taattgaaga cccagatgaa agcacatccg gagtggagtc cgccgtcttg 2101 agagggtttc tcattatagg taaggaagac agaagatacg gaccagcatt aagcatcaat 2161 gaactgagta accttgcaaa aggggaaaag gctaatgtgc taatcgggca aggagacgtg 2221 gtgttggtaa tgaaacgaaa acgggactct agcatactta ctgacagcca gacagcgacc 2281 aaaagaattc ggatggccat caattaatgt tgaatagttt aaaaacgacc ttgtttctac 2341 t // LOCUS NC_007372 2341 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 2, complete sequence. ACCESSION NC_007372 VERSION NC_007372.1 GI:73919148 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 2341) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 2341) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2341) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002070. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2341 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="2" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 25..2298 /gene="PB1" /locus_tag="FLUAVH3N2_s2p1" /db_xref="GeneID:3655159" CDS 25..2298 /gene="PB1" /locus_tag="FLUAVH3N2_s2p1" /codon_start=1 /product="polymerase PB1" /protein_id="YP_308847.1" /db_xref="GI:73919149" /db_xref="GeneID:3655159" /translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN RTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGI FENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANES GRLIDFLKDVMESMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYL IRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGN EKKAKLANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITKNQPEWFR NILSIAPIMFSNKMARLGKGYMFESKRMKLRTQIPAEMLASIDLKYFNESTRKKIEKI RPLLIDGTASLSPGMMMGMFNMLSTVLGVSVLNLGQKKYTKTTYWWDGLQSSDDFALI VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSME LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDT QIQTRRSFELKKLWDQTQSRAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDENYRGRL CNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAVATTHSWNPKRNRSILNTSQRGI LEDEQMYQKCCNLFEKFFPSSSYRRPIGISSMVEAMVSRARIDARIDFESGRIKKEEF SEIMKICSTIEELRRQK" gene 119..391 /gene="PB1-F2" /locus_tag="FLUAVH3N2_s2p2" /db_xref="GeneID:3655160" CDS 119..391 /gene="PB1-F2" /locus_tag="FLUAVH3N2_s2p2" /codon_start=1 /product="PB1-F2 protein" /protein_id="YP_308848.1" /db_xref="GI:73919150" /db_xref="GeneID:3655160" /translation="MEQEQDTPWTQSTEHTNIQRRGSGRQIQKLGHPNSTQLMDHYLR IMSQVDMHKQTVSWRLWPSLKNPTQVSLRTHALKQWKSFNKQGWTN" ORIGIN 1 agcaaaagca ggcaaaccat ttgaatggat gtcaatccga ctctactgtt cctaaaggtt 61 ccagcgcaaa atgccataag caccacattc ccttatactg gagatcctcc atacagccat 121 ggaacaggaa caggatacac catggacaca gtcaacagaa cacaccaata ttcagagaag 181 gggaagtgga cgacaaatac agaaactggg gcaccccaac tcaacccaat tgatggacca 241 ctacctgagg ataatgagcc aagtggatat gcacaaacag actgtgtcct ggaggctatg 301 gccttccttg aagaatccca cccaggtatc tttgagaact catgccttga aacaatggaa 361 gtcgttcaac aaacaagggt ggacaaacta acccaaggcc gccagactta tgattggaca 421 ttaaacagaa atcaaccggc agcaactgca ttagccaaca ccatagaagt ttttagatcg 481 aatggactaa cagccaatga atcaggaagg ctaatagatt tcctcaagga tgtgatggaa 541 tcaatggata aagaggaaat ggagataaca acacactttc aaagaaaaag gagagtaaga 601 gacaacatga ccaagaaaat ggtcacacaa agaacaatag ggaagaaaaa acaaagagtg 661 aataagagag gctatctaat aagagctttg acattgaaca cgatgaccaa agatgcagag 721 agaggtaaat taaaaagaag ggctattgca acacccggga tgcaaattag agggttcgtg 781 tacttcgttg aaactttagc tagaagcatt tgcgaaaagc ttgaacagtc tggacttccg 841 gttgggggta atgaaaagaa ggccaaactg gcaaatgttg tgagaaaaat gatgactaat 901 tcacaagaca ctgagctttc tttcacaatc actggggaca acactaagtg gaatgaaaat 961 caaaaccctc gaatgttttt ggcgatgatt acatatatca caaaaaatca acctgagtgg 1021 ttcagaaaca tcctgagcat cgcaccaata atgttctcaa acaaaatggc aagactagga 1081 aaaggataca tgttcgagag taagagaatg aagctccgaa cacaaatacc cgcagaaatg 1141 ctagcaagca ttgacctgaa gtatttcaat gaatcaacaa ggaagaaaat tgagaaaata 1201 aggcctcttc taatagatgg cacagcatca ttgagccctg ggatgatgat gggcatgttc 1261 aacatgctaa gtacggtttt aggagtctcg gtactgaatc ttgggcaaaa gaaatacacc 1321 aagacaacat actggtggga tgggctccaa tcctccgacg attttgccct catagtgaat 1381 gcaccaaatc atgagggaat acaagcagga gtggatagat tctacaggac ctgcaagtta 1441 gtgggaatca acatgagcaa aaagaagtcc tatataaata aaacagggac atttgaattc 1501 acaagctttt tttatcgata tggatttgtg gctaatttta gcatggagct tcccagtttt 1561 ggagtgtctg gaataaacga gtcagctgat atgagtattg gagtaacagt gataaagaac 1621 aacatgataa acaatgacct tgggccagca acagcccaga tggctctcca attgttcatc 1681 aaagactaca gatatacata taggtgccat agaggagaca cacaaattca gacgagaaga 1741 tcattcgagc taaagaagct gtgggatcaa acccaatcaa gggcaggact attggtatca 1801 gatgggggac caaacttata caatatccgg aaccttcaca tccctgaagt ctgcttaaag 1861 tgggagctaa tggatgagaa ttatcgggga agactttgta accccctgaa tccctttgtc 1921 agccataaag aaattgagtc tgtaaacaat gctgtagtga tgccagccca cggtccagcc 1981 aaaagtatgg aatatgatgc cgttgcaact acacactcct ggaatcccaa gaggaaccgc 2041 tctattctaa acactagcca aaggggaatt cttgaggatg aacagatgta ccaaaagtgc 2101 tgcaacttgt tcgagaaatt tttccctagt agttcatata ggagaccgat tggaatttct 2161 agcatggtgg aggccatggt gtctagggcc cggattgatg ccagaattga cttcgagtct 2221 ggacggatta agaaggaaga gttctctgag atcatgaaga tctgttccac cattgaagaa 2281 ctcagacggc aaaaataatg aatttagctt gtccttcatg aaaaaatgcc ttgtttctac 2341 t // LOCUS NC_007371 2233 bp cRNA linear VRL 06-FEB-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 3, complete sequence. ACCESSION NC_007371 VERSION NC_007371.1 GI:73919133 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 2233) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 2233) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2233) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to CY002069. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2233 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="3" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 25..2175 /gene="PA" /locus_tag="FLUAVH3N2_s3p1" /db_xref="GeneID:3655158" CDS 25..2175 /gene="PA" /locus_tag="FLUAVH3N2_s3p1" /codon_start=1 /product="polymerase PA" /protein_id="YP_308846.1" /db_xref="GI:73919134" /db_xref="GeneID:3655158" /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDLKIETNKFAAICTHLEV CFMYSDFHFINEQGESIVVELDDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGAEK PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSENTHIHIFSFTGEEIATKAD YTLDEESRARIKTRLFTIRQEMANRGLWDSFRQSERGEETIEEKFEISGTMRRLADQS LPPKFSCLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLKTTPRPIKLPNGPPC YQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCIKTFFGWKEPYIVKPHEKGINSNY LLSWKQVLSELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDNCRDISDLKQ YDSDEPELRSLSSWIQNEFNKACELTDSIWIELDEIGEDVAPIEYIASMRRNYFTAEV SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGR SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRSAIGQISRPMFLYVR TNGTSKVKMKWGMEMRRCLLQSLQQIESMIEAESSIKEKDMTKEFFENKSEAWPIGES PKGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLVVQALRDNLEPGTFD LGGLYEAIEECLINDPWVLLNASWFNSFLTHALK" gene 25..784 /gene="PA-X" /locus_tag="FLUAVH3N2_s3p2" /db_xref="GeneID:13229459" CDS join(25..597,599..784) /gene="PA-X" /locus_tag="FLUAVH3N2_s3p2" /ribosomal_slippage /codon_start=1 /product="PA-X protein" /protein_id="YP_006575868.1" /db_xref="GI:399912626" /db_xref="GeneID:13229459" /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDLKIETNKFAAICTHLEV CFMYSDFHFINEQGESIVVELDDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGAEK PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSENTHIHIFSFTGEEIATKAD YTLDEESRARIKTRLFTIRQEMANRGLWDSFVSPKEAKKQLKKNLKSQELCVGLPTKV SHRNSPALRILEPMWMDSNRTAALRASFLKCPKK" ORIGIN 1 agcaaaagca ggtactgatt cgaaatggaa gattttgtgc gacaatgctt caacccgatg 61 attgtcgaac ttgcagaaaa agcaatgaaa gagtatggag aggatctgaa aattgaaaca 121 aacaaatttg cagcaatatg cacccacttg gaggtatgtt tcatgtattc agattttcat 181 ttcatcaatg aacaaggcga atcaatagtg gtagaacttg atgatccaaa tgcactgtta 241 aagcacagat ttgaaataat cgaggggaga gacagaacaa tggcctggac agtagtaaac 301 agtatctgca acactactgg agcagaaaaa ccaaagtttc taccagattt gtatgattac 361 aaggagaata gattcatcga aattggagtg acaagaagag aagtccacat atattacctt 421 gaaaaggcca ataaaattaa atctgagaac acacacattc acatcttctc attcactggg 481 gaggaaatag ccacaaaggc agactacact ctcgacgagg aaagcagggc taggattaaa 541 accaggctat ttaccataag acaagaaatg gccaacagag gcctctggga ttcctttcgt 601 cagtccgaaa gaggcgaaga aacaattgaa gaaaaatttg aaatctcagg aactatgcgt 661 aggcttgccg accaaagtct cccaccgaaa ttctcctgcc ttgagaattt tagagcctat 721 gtggatggat tcgaaccgaa cggctgcatt gagggcaagc tttctcaaat gtccaaagaa 781 gtgaatgcca aaattgaacc ttttctgaag acaacaccaa gaccaatcaa acttcctaat 841 ggacctcctt gttatcagcg gtccaaattc ctcctgatgg atgctttgaa attgagcatt 901 gaagacccaa gtcatgaagg agaagggatt ccattatatg atgcgatcaa gtgcataaaa 961 acattctttg gatggaaaga accttatata gtcaaaccac acgaaaaggg aataaattca 1021 aattacctgc tgtcatggaa gcaagtattg tcagaattgc aggacattga aaatgaggag 1081 aagatcccaa ggactaaaaa catgaagaaa acgagtcaac taaagtgggc tcttggtgaa 1141 aacatggcac cagagaaagt agactttgac aactgcagag acataagcga tttgaagcaa 1201 tatgatagtg acgaacctga attaaggtca ctttcaagct ggatacagaa tgagttcaac 1261 aaggcctgcg agctaactga ttcaatctgg atagagctcg atgaaattgg agaggacgta 1321 gccccaattg agtacattgc aagcatgagg aggaattatt tcacagcaga ggtgtcccat 1381 tgtagagcca ctgagtacat aatgaagggg gtatacatta atactgccct gctcaatgca 1441 tcctgtgcag caatggacga ttttcaacta attcccatga taagcaagtg cagaactaaa 1501 gagggaaggc gaaaaaccaa tttatatgga ttcatcataa agggaagatc tcatttaagg 1561 aatgacacag atgtggtaaa ctttgtgagc atggagtttt ctctcactga cccgagactt 1621 gagccacata aatgggagaa atactgtgtc cttgagatag gagatatgtt actaagaagt 1681 gccataggcc aaatttcaag gcctatgttc ttgtatgtga ggacaaacgg aacatcaaag 1741 gtcaaaatga aatggggaat ggagatgaga cgttgcctcc ttcagtcact ccagcagatc 1801 gagagcatga ttgaagccga gtcctcgatt aaagagaaag acatgaccaa agagtttttt 1861 gagaataaat cagaagcatg gcccattggg gagtccccca agggagtgga agaaggttcc 1921 attgggaaag tctgtaggac tctattggct aagtcagtgt tcaatagcct gtatgcatca 1981 ccacaattgg aaggattttc agcggagtca agaaaactgc ttcttgttgt tcaggctctt 2041 agggacaacc tcgaacctgg gacctttgat ctcggggggc tatatgaagc aattgaggag 2101 tgcctgatta atgatccctg ggttttgctc aatgcatctt ggttcaactc cttcctgaca 2161 catgcattaa aatagttatg gcagtgctac tatttgttat ccgtactgtc caaaaaagta 2221 ccttgtttct act // LOCUS NC_007366 1762 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 4, complete sequence. ACCESSION NC_007366 VERSION NC_007366.1 GI:73919206 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1762) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 1762) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1762) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002064. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1762 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="4" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 30..1730 /gene="HA" /locus_tag="FLUAVH3N2_s4p1" /db_xref="GeneID:3655151" CDS 30..1730 /gene="HA" /locus_tag="FLUAVH3N2_s4p1" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="YP_308839.1" /db_xref="GI:73919207" /db_xref="GeneID:3655151" /translation="MKTIIALSYILCLVFAQKLPGNDNSTATLCLGHHAVPNGTIVKT ITNDQIEVTNATELVQSSSTGGICDSPHQILDGENCTLIDALLGDPQCDGFQNKKWDL FVERSKAYSNCYPYDVPDYASLRSLVASSGTLEFNNESFNWTGVTQNGTSSACKRRSN NSFFSRLNWLTHLKFKYPALNVTMPNNEKFDKLYIWGVHHPGTDNDQISLYAQASGRI TVSTKRSQQTVIPSIGSRPRIRDVPSRISIYWTIVKPGDILLINSTGNLIAPRGYFKI RSGKSSIMRSDAPIGKCNSECITPNGSIPNDKPFQNVNRITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ INGKLNRLIGKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYR DEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVALLGFIMWACQKGNIRCNICI " sig_peptide 30..77 /gene="HA" /locus_tag="FLUAVH3N2_s4p1" mat_peptide 78..1064 /gene="HA" /locus_tag="FLUAVH3N2_s4p1" /product="HA1" /protein_id="YP_308875.1" /db_xref="GI:73921186" mat_peptide 1065..1727 /gene="HA" /locus_tag="FLUAVH3N2_s4p1" /product="HA2" /protein_id="YP_308876.1" /db_xref="GI:73921187" ORIGIN 1 agcaaaagca ggggataatt ctattaacca tgaagactat cattgctttg agctacattc 61 tatgtctggt tttcgctcaa aaacttcccg gaaatgacaa cagcacggca acgctgtgcc 121 ttgggcacca tgcagtacca aacggaacga tagtgaaaac aatcacgaat gaccaaattg 181 aagtcactaa tgctactgaa ctggttcaga gttcctcaac aggtggaata tgcgacagtc 241 ctcatcagat ccttgatgga gaaaactgca cactaataga tgctctattg ggagaccctc 301 agtgtgatgg cttccaaaat aagaaatggg acctttttgt tgaacgcagc aaagcctaca 361 gcaactgtta cccttatgat gtgccggatt atgcctccct taggtcacta gttgcctcat 421 ccggcacact ggagtttaac aatgaaagct tcaattggac tggagtcact caaaatggaa 481 caagctctgc ttgcaaaagg agatctaata acagtttctt tagtagattg aattggttga 541 cccacttaaa attcaaatac ccagcattga acgtgactat gccaaacaat gaaaaatttg 601 acaaactgta catttggggg gttcaccacc cgggtacgga caatgaccaa atcagcctat 661 atgctcaagc atcaggaaga atcacagtct ctaccaaaag aagccaacaa accgtaatcc 721 cgagtatcgg atctagaccc aggataaggg atgtccccag cagaataagc atctattgga 781 caatagtaaa accgggagac atacttttga ttaacagcac agggaatcta attgctcctc 841 ggggttactt caaaatacga agtgggaaaa gctcaataat gagatcagat gcacccattg 901 gcaaatgcaa ttctgaatgc atcactccaa atggaagcat tcccaatgac aaaccatttc 961 aaaatgtaaa caggatcaca tatggggcct gtcccagata tgttaagcaa aacactctga 1021 aattggcaac agggatgcga aatgtaccag agaaacaaac tagaggcata tttggcgcaa 1081 tcgcgggttt catagaaaat ggttgggagg gaatggtaga cggttggtac ggtttcaggc 1141 atcaaaattc tgagggaaca ggacaagcag cagatctcaa aagcactcaa gcagcaatca 1201 accaaatcaa tgggaagctg aataggttga tcgggaaaac aaacgagaaa ttccatcaga 1261 ttgaaaaaga attctcagaa gtagaaggga gaattcagga cctcgagaaa tatgttgagg 1321 acactaaaat agatctctgg tcatacaacg cggagcttct tgtggccctg gagaaccaac 1381 atacaattga tctaactgac tcagaaatga acaaactgtt tgaaagaaca aagaagcaac 1441 tgagggaaaa tgctgaggat atgggcaatg gttgtttcaa aatataccac aaatgtgaca 1501 atgcctgcat agggtcaatc agaaatggaa cttatgacca tgatgtatac agagatgaag 1561 cattaaacaa ccggttccag atcaaaggtg ttgagttgaa gtcaggatac aaagattgga 1621 tcctatggat ttcctttgcc atatcatgtt ttttgctttg tgttgctttg ttggggttca 1681 tcatgtgggc ctgccaaaaa ggcaacatta ggtgcaacat ttgcatttga gtgcattaat 1741 taaaaacacc cttgtttcta ct // LOCUS NC_007369 1566 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 5, complete sequence. ACCESSION NC_007369 VERSION NC_007369.1 GI:73919146 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1566) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 1566) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1566) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002067. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1566 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="5" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 46..1542 /gene="NP" /locus_tag="FLUAVH3N2_s5p1" /db_xref="GeneID:3655155" CDS 46..1542 /gene="NP" /locus_tag="FLUAVH3N2_s5p1" /codon_start=1 /product="nucleocapsid protein" /protein_id="YP_308843.1" /db_xref="GI:73919147" /db_xref="GeneID:3655155" /translation="MASQGTKRSYEQMETDGDRQNATEIRASVGKMIDGIGRFYIQMC TELKLSDHEGRLIQNSLTIEKMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDG KWMRELVLYDKEEIRRIWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMD PRMCSLMQGSTLPRRSGAAGAAVKGIGTMVMELIRMVKRGINDRNFWRGENGRKTRSA YERMCNILKGKFQTAAQRAMVDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCL PACAYGPAVSSGYDFEKEGYSLVGIDPFKLLQNSQIYSLIRPNENPAHKSQLVWMACH SAAFEDLRLLSFIRGTKVSPRGKLSTRGVQIASNENMDNMGSSTLELRSGYWAIRTRS GGNTNQQRASAGQTSVQPTFSVQRNLPFEKSTIMAAFTGNTEGRTSDMRAEIIRMMEG AKPEEVSFRGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" ORIGIN 1 agcaaaagca gggttaataa tcactcaccg agtgacatca aaatcatggc gtcccaaggc 61 accaaacggt cttatgaaca gatggaaact gatggggatc gccagaatgc aactgagatt 121 agggcatccg tcgggaagat gattgatgga attgggagat tctacatcca aatgtgcact 181 gaacttaaac tcagtgatca tgaagggcgg ttgatccaga acagcttgac aatagagaaa 241 atggtgctct ctgcttttga tgaaagaagg aataaatacc tggaagaaca ccccagcgcg 301 gggaaagatc ccaagaaaac tggggggccc atatacagga gagtagatgg aaaatggatg 361 agggaactcg tcctttatga caaagaagag ataaggcgaa tctggcgcca agccaacaat 421 ggtgaggatg cgacagctgg tctaactcac ataatgatct ggcattccaa tttgaatgat 481 gcaacatacc agaggacaag agctcttgtt cgaactggaa tggatcccag aatgtgctct 541 ctgatgcagg gctcgactct ccctagaagg tccggagctg caggtgctgc agtcaaagga 601 atcgggacaa tggtgatgga actgatcaga atggtcaaac gggggatcaa cgatcgaaat 661 ttctggagag gtgagaatgg gcggaaaaca agaagtgctt atgagagaat gtgcaacatt 721 cttaaaggaa aatttcaaac agctgcacaa agagcaatgg tggatcaagt gagagaaagt 781 cggaacccag gaaatgctga gatcgaagat ctcatatttt tggcaagatc tgcattgata 841 ttgagagggt cagttgctca caaatcttgc ctacctgcct gtgcgtatgg acctgcagta 901 tccagtgggt acgacttcga aaaagaggga tattccttgg tgggaataga ccctttcaaa 961 ctacttcaaa atagccaaat atacagccta atcagaccta acgagaatcc agcacacaag 1021 agtcagctgg tgtggatggc atgccattct gctgcatttg aagatttaag attgttaagc 1081 ttcatcagag ggacaaaagt atctccgcgg gggaaactgt caactagagg agtacaaatt 1141 gcttcaaatg agaacatgga taatatggga tcgagcactc ttgaactgag aagcgggtac 1201 tgggccataa ggaccaggag tggaggaaac actaatcaac agagggcctc cgcaggccaa 1261 accagtgtgc aacctacgtt ttctgtacaa agaaacctcc catttgaaaa gtcaaccatc 1321 atggcagcat tcactggaaa tacggaggga aggacttcag acatgagggc agaaatcata 1381 agaatgatgg aaggtgcaaa accagaagaa gtgtcattcc gggggagggg agttttcgag 1441 ctctcagacg agaaggcaac gaacccgatc gtgccctctt ttgatatgag taatgaagga 1501 tcttatttct tcggagacaa tgcagaagag tacgacaatt aaggaaaaaa tacccttgtt 1561 tctact // LOCUS NC_007368 1467 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 6, complete sequence. ACCESSION NC_007368 VERSION NC_007368.1 GI:73919135 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1467) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 1467) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1467) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002066. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1467 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="6" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 20..1429 /gene="NA" /locus_tag="FLUAVH3N2_s6p1" /db_xref="GeneID:3655154" CDS 20..1429 /gene="NA" /locus_tag="FLUAVH3N2_s6p1" /codon_start=1 /product="neuraminidase" /protein_id="YP_308842.1" /db_xref="GI:73919136" /db_xref="GeneID:3655154" /translation="MNPNQKIITIGSVSLTISTICFFMQIAILITTVTLHFKQYEFNS PPNNQVMLCEPTIIERNITEIVYLTNTTIEKEMCPKLAEYRNWSKPQCDITGFAPFSK DNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNVHSNDTVHDRTPYRTLLM NELGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGDDKNATASFIYNGRLVDSIVSW SKKILRTQESECVCINGTCTVVMTDGSASGKADTKILFIEEGKIIHTSTLSGSAQHVE ECSCYPRYPGVRCVCRDNWKGSNRPIVDINIKDYSIVSSYVCSGLVGDTPRKNDSSSS SHCLDPNNEEGGHGVKGWAFDDGNDVWMGRTISEKLRSGYETFKVIEGWSKPNSKLQI NRQVIVDRGNRSGYSGIFSVEGKSCINRCFYVELIRGRKEETEVLWTSNSIVVFCGTS GTYGTGSWPDGADINLMPI" ORIGIN 1 agcaaaagca ggagtaaaga tgaatccaaa tcaaaagata ataacgattg gctctgtttc 61 tctcaccatt tccacaatat gcttcttcat gcaaattgcc atcctgataa ccactgtaac 121 attgcatttc aagcaatatg aattcaactc ccccccaaac aaccaagtga tgctgtgtga 181 accaacaata atagaaagaa acataacaga gatagtgtat ctgaccaaca ccaccataga 241 gaaggaaatg tgccccaaac tagcagaata cagaaattgg tcaaagccgc aatgtgacat 301 tacaggattt gcaccttttt ctaaggacaa ttcgattagg ctttccgctg gtggggacat 361 ctgggtgaca agagaacctt atgtgtcatg cgaccctgac aagtgttacc aatttgccct 421 tggacaggga acaacactaa acaacgtgca ttcaaatgac acagtacatg ataggacccc 481 ttatcggacc ctattgatga atgaattagg tgttccattt catctgggga ccaagcaagt 541 gtgcatagca tggtccagct caagttgtca cgatggaaaa gcatggctgc atgtttgtgt 601 aacgggggat gataaaaatg caactgctag cttcatttac aatgggaggc ttgtagatag 661 tattgtttca tggtccaaaa aaatcctcag gacccaggag tcagaatgcg tttgtatcaa 721 tggaacttgt acagtagtaa tgactgatgg gagtgcttca ggaaaagctg atactaaaat 781 actattcatt gaggagggga aaatcattca tactagcaca ttgtcaggaa gtgctcagca 841 tgtcgaggag tgctcctgct atcctcgata tcctggtgtc agatgtgtct gcagagacaa 901 ctggaaaggc tccaataggc ccatcgtaga tataaacata aaggattata gcattgtttc 961 cagttatgtg tgctcagggc ttgttggaga cacacccaga aaaaacgaca gctccagcag 1021 tagccattgc ttggatccta acaatgaaga aggtggtcat ggagtgaaag gctgggcctt 1081 tgatgatgga aatgacgtgt ggatgggaag aacgatcagc gagaagttac gctcaggata 1141 tgaaaccttc aaagtcattg aaggctggtc caaacctaat tccaaattgc agataaatag 1201 gcaagtcata gttgacagag gtaataggtc cggttattct ggtattttct ctgttgaagg 1261 caaaagctgc atcaatcggt gcttttatgt ggagttgata aggggaagaa aagaggaaac 1321 tgaagtcttg tggacctcaa acagtattgt tgtgttttgt ggcacctcag gtacatatgg 1381 aacaggctca tggcctgatg gggcggacat caatctcatg cctatataag ctttcgcaat 1441 tttagaaaaa aactccttgt ttctact // LOCUS NC_007367 1027 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 7, complete sequence. ACCESSION NC_007367 VERSION NC_007367.1 GI:73919151 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1027) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 1027) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1027) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002065. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..1027 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="7" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 26..1007 /gene="M2" /locus_tag="FLUAVH3N2_s7p1" /db_xref="GeneID:3655153" CDS join(26..51,740..1007) /gene="M2" /locus_tag="FLUAVH3N2_s7p1" /codon_start=1 /product="matrix protein 2" /protein_id="YP_308840.1" /db_xref="GI:73919153" /db_xref="GeneID:3655153" /translation="MSLLTEVETPIRNEWGCRCNDSSDPLVVAASIIGILHLILWILD RLFFKCVYRLFKHGLKRGPSTEGVPESMREEYRKEQQNAVDADDSHFVSIELE" gene 26..784 /gene="M1" /locus_tag="FLUAVH3N2_s7p2" /db_xref="GeneID:3655152" CDS 26..784 /gene="M1" /locus_tag="FLUAVH3N2_s7p2" /codon_start=1 /product="matrix protein 1" /protein_id="YP_308841.1" /db_xref="GI:73919152" /db_xref="GeneID:3655152" /translation="MSLLTEVETYVLSIVPSGPLKAEIAQRLEDVFAGKNTDLEALME WLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDKAVKLYRK LKREITFHGAKEIALSYSAGALASCMGLIYNRMGAVTTEVAFGLVCATCEQIADSQHR SHRQMVATTNPLIKHENRMVLASTTAKAMEQMAGSSEQAAEAMEIASQARQMVQAMRA VGTHPSSSTGLRDDLLENLQTYQKRMGVQMQRFK" ORIGIN 1 agcaaaagca ggtagatatt gaaagatgag ccttctaacc gaggtcgaaa cgtatgttct 61 ctctatcgtt ccatcaggcc ccctcaaagc cgagatcgcg cagagacttg aagatgtctt 121 tgctgggaaa aacacagatc ttgaggctct catggaatgg ctaaagacaa gaccaattct 181 gtcacctctg actaagggga ttttggggtt tgtgttcacg ctcaccgtgc ccagtgagcg 241 aggactgcag cgtagacgct ttgtccaaaa tgccctcaat gggaatggag atccaaataa 301 catggacaaa gcagttaaac tgtataggaa acttaagagg gagataacgt tccatggggc 361 caaagaaata gctctcagtt attctgctgg tgcacttgcc agttgcatgg gcctcatata 421 caataggatg ggggctgtaa ccactgaagt ggcatttggc ctggtatgtg caacatgtga 481 acagattgct gactcccagc acaggtctca taggcaaatg gtggcaacaa ccaatccatt 541 aataaaacat gagaacagaa tggttttggc cagcactaca gctaaggcta tggagcaaat 601 ggctggatca agtgagcagg cagcggaggc catggaaatt gctagtcagg ccaggcaaat 661 ggtgcaggca atgagagccg ttgggactca tcctagctcc agtactggtc taagagatga 721 tcttcttgaa aatttgcaga cctatcagaa acgaatgggg gtgcagatgc aacgattcaa 781 gtgacccgct tgttgttgcc gcgagtatca ttgggatctt gcacttgata ttgtggattc 841 ttgatcgtct ttttttcaaa tgcgtctatc gactcttcaa acacggcctt aaaagaggcc 901 cttctacgga aggagtacct gagtctatga gggaagaata tcgaaaggaa cagcagaatg 961 ctgtggatgc tgacgacagt cattttgtca gcatagagtt ggagtaaaaa actaccttgt 1021 ttctact // LOCUS NC_007370 890 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 8, complete sequence. ACCESSION NC_007370 VERSION NC_007370.1 GI:73919211 DBLINK BioProject: PRJNA15622 KEYWORDS RefSeq. SOURCE Influenza A virus (A/New York/392/2004(H3N2)) ORGANISM Influenza A virus (A/New York/392/2004(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 890) AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V., Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L., Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y., Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T. TITLE The NIAID Influenza Genome Sequencing Project JOURNAL Unpublished REFERENCE 2 (bases 1 to 890) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 890) CONSRTM The NIAID Influenza Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI, National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from CY002068. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..890 /organism="Influenza A virus (A/New York/392/2004(H3N2))" /mol_type="viral cRNA" /strain="A/New York/392/2004" /serotype="H3N2" /isolation_source="gender:M; age:16y" /host="Homo sapiens" /db_xref="taxon:335341" /segment="8" /lab_host="RhMK 1 passage(s)" /country="USA: Tompkins County, NY" /collection_date="21-Dec-2004" gene 27..864 /gene="NEP" /locus_tag="FLUAVH3N2_s8p1" /gene_synonym="NS2" /db_xref="GeneID:3655157" CDS join(27..56,529..864) /gene="NEP" /locus_tag="FLUAVH3N2_s8p1" /gene_synonym="NS2" /codon_start=1 /product="nonstructural protein 2" /protein_id="YP_308844.1" /db_xref="GI:73919213" /db_xref="GeneID:3655157" /translation="MDSNTVSSFQDILLRMSKMQLGSSSEDLNGMITQFESLKIYRDS LGEAVMRMGDLHLLQNRNGKWREQLGQKFEEIRWLIEEVRHRLKTTENSFEQITFMQA LQLLFEVEQEIRTFSFQLI" gene 27..719 /gene="NS1" /locus_tag="FLUAVH3N2_s8p2" /db_xref="GeneID:3655156" CDS 27..719 /gene="NS1" /locus_tag="FLUAVH3N2_s8p2" /codon_start=1 /product="nonstructural protein 1" /protein_id="YP_308845.1" /db_xref="GI:73919212" /db_xref="GeneID:3655156" /translation="MDSNTVSSFQVDCFLWHIRKQVVDQELSDAPFLDRLRRDQRSLR GRGNTLGLDIKAATHVGKQIVEKILKEESDEALKMTMVSTPASRYITDMTIEELSRNW FMLMPKQKVEGPLCIRMDQAIMEKNIMLKANFSVIFDRLETIVLLRAFTEEGAIVGEI SPLPSFPGHTIEDVKNAIGVLIGGLEWNDNTVRVSKNLQRFAWRSSNENGGPPLTPKQ KRKMARTARSKV" ORIGIN 1 agcaaaagca gggtgacaaa gacataatgg attccaacac tgtgtcaagt ttccaggtag 61 attgctttct ttggcatatc cggaaacaag ttgtagacca agaactgagt gatgccccat 121 tccttgatcg gcttcgccga gatcagaggt ccctaagggg aagaggcaat actctcggtc 181 tagacatcaa agcagccacc catgttggaa agcaaattgt agaaaagatt ctgaaagaag 241 aatctgatga ggcacttaaa atgaccatgg tctccacacc tgcttcgcga tacataactg 301 acatgactat tgaggaattg tcaagaaact ggttcatgct aatgcccaag cagaaagtgg 361 aaggacctct ttgcatcaga atggaccagg caatcatgga gaaaaacatc atgttgaaag 421 cgaatttcag tgtgattttt gaccgactag agaccatagt attactaagg gctttcaccg 481 aagagggagc aattgttggc gaaatctcac cattgccttc ttttccagga catactattg 541 aggatgtcaa aaatgcaatt ggggtcctca tcggaggact tgaatggaat gataacacag 601 ttcgagtctc taaaaatcta cagagattcg cttggagaag cagtaatgag aatgggggac 661 ctccacttac tccaaaacag aaacggaaaa tggcgagaac agctaggtca aaagtttgaa 721 gagataagat ggctgattga agaagtgaga cacagactaa aaacaactga aaatagcttt 781 gaacaaataa cattcatgca agcattacaa ctgctgtttg aagtggaaca ggagataaga 841 actttctcat ttcagcttat ttaatgataa aaaacaccct tgtttctact //