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BIO8102B: Advanced Applied Biostatistics

Syllabus

Lecture slides

  1. Intro to GLM (1): Doing everyting in regression: Numerical illustration
  2. Doing multi-way ANOVA and ANCOVA in regression: SS1, SS3, Model selection Numerical illustration + Intro to R
  3. GLM with categorical and continuous independent variables: same slope (ANCOVA) or different slopes
  4. Common mistakes in statistical inference involving more than one independent variable. Lecture slides
  5. The least-square principle in regression and beyond (and a briefing on the maximum likelihood method): PPT, Intro_LS_LM.xlsx, RegAbsDeviationBootstrap.xlsx, and LS_ML_Goodness_of_fit.xlsx
  6. Multiple regression, and Stepwise regression
  7. Non-linear regression
  8. Student requested topic: phylogeny-based comparative method
  9. Student requested topic: Spatial statistics (1)
  10. Student requested topic: Spatial statistics (2)
  11. Multiple regression, and Stepwise regression
  12. Polynomial regression and transformation in regression
  13. Non-linear regression
  14. Multivariate statistics Pincipal Component Analysis, Linear Discrimination Function Analysis, Cluster Analysis, MANOVA and Canonical correlation (optional)
  15. Categorical data analysis

R and data files

  1. Describe.R
  2. StatsGroupData.R
  3. DarwinPlantBreeding.txt
  4. DarwinPlantBreeding.txt
  5. ChestData.txt
  6. WranglerData.txt
  7. Mercury2Gr_A.txt
  8. Mercury2Gr_B.txt
  9. Mercury3Gr_A.txt
  10. RandCompleteBlock.txt
  11. TwoWayANOVA.txt
  12. DataTransformTwoWayANOVA.txt
  13. TwoWayANOVAInteraction.txt
  14. ThreeWayANOVA.txt
  15. RepeatedMeasures.txt
  16. OrganGeneExpression.txt
  17. LakeBiomass.txt
  18. LakeIronBiomass.txt
  19. BartlettTest.txt
  20. BeetleWtLoss.txt
  21. WasteCost.txt
  22. Stepwise.txt
  23. poly1.txt
  24. ElephantWt.txt
  25. Pesticide.txt
  26. PowerTransform.txt
  27. nlinGESE.txt
  28. nlinLogistic.txt
  29. AncovaEx1Drug.txt
  30. AncovaEx2TeachingEval.txt
  31. DiffSlopeMuscle.txt
  32. PCAex1.txt
  33. Crime.txt
  34. MANOVAex1.txt
  35. MANOVAex2.txt
  36. XYZ.txt
  37. Cancor.csv
  38. Cancor.txt
  39. KidneyStoneLumped.txt
  40. KidneyStone.txt
  41. HairColor.txt
  42. Titanic.txt
  43. ThreeD.txt
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